suggesting that the propagation of the calcium wave was sufficient to confer cell We next sought to identify the locus of calcium elevation during convergent extension in the isolated DMZ at single-cell resolution

April 11, 2017

these genes have not shown consistent associations across different studies. Recently, we established the SpiroMeta consortium and published a large collective meta-analysis of lung function genome-wide association studies in 20,288 individuals of European origin, with follow-up of top SNPs in a further 54,276 individuals. Our study confirmed the hedgehog interacting protein association previously published and identified five new loci associated with FEV1 or FEV1/FVC ratio including tensin 1 gene, glutathione Stransferase, C-terminal domain containing, 5-hydroxytryptamine receptor 4, advanced glycosylation end product-specific receptor, and thrombospondin, type I, domain containing 4. A study with similar design by the CHARGE consortium also identified HHIP, AGER, HTR4, and GSTCD, and in addition suggested a potential role of five additional genes, a disintegrin and metalloproteinase domain 19, family with sequence similarity 13, member A, patched homolog 1, and phosphotyrosine interaction domain containing . The identification of these genes offers potential insight into the pathophysiology of altered lung function. The SpiroMeta consortium provides a powerful resource in which to study genetic associations with lung function. We aimed to comprehensively evaluate whether genes studied in candidate gene or small genome-wide association studies, and reported to be associated with lung function or COPD in these studies, were associated with lung function measures in this large general population sample. family based designs. The remaining literature reported association with lung function traits within populations with specific respiratory diseases and COPD ), or in general population cohorts. Nine publications studied other populations which included patients with cystic fibrosis, SERPINA1 deficiency, cotton and grain workers, lung cancer, fire fighters and post myocardial MedChemExpress NVP-BHG712 infarction patients. Some papers reported more than one endpoint. These 104 relevant publications identified 130 genes and 48 intergenic SNPs. We investigated association between FEV1 and FEV1/FVC and each of the 16,936 genotyped and imputed SNPs spanning these regions in the SpiroMeta dataset. Contribution of all tested genes to lung function measures in SpiroMeta Quantile-quantile plots did not show large deviations between observed and expected P values for FEV1 and FEV1/ FVC in all participants and for FEV1/FVC in ever-smokers. The plot of FEV1 in ever-smokers, however, shows slight deviations for high signal SNPs. The genomic inflation factor, l for FEV1 is 0.83 in all individuals and 1.05 in smokers; l for FEV1/FVC in all individuals is 0.92 and 1.13 in smokers. Using the Bonferroni corrected P value threshold of 1.361025, none of the tested SNPs demonstrated significant association with either FEV1 or FEV1/FVC. Association results in all individuals In order to examine possible signals in greater detail, we also explored region plots for the top SNPs identified. The three top loci with the most significant P values for all regions tested in all individuals are presented in table 1. Among all individuals, the strongest association with 11423396 FEV1 was with rs204652 in MACRO domain containing 2 on chromosome 20. SNP rs17133553 in Contactin 5 on chromosome 11 was the second top locus for association with FEV1 and third for FEV1/FVC ratio. SNP rs803450 in Methylenetetrahydrofolate dehydrogenase 1like on chromosome 6 showed association with FEV1 in all individuals. For FE